All Implemented Interfaces:
```
public class Blast

                    
```
Entrypoint to the Blast library.
Provides methods for constructing BLAST+ tool configurations or parsing them from JSON input.

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description
`public final static Blast`	`INSTANCE`

Constructor Summary

Constructors
Constructor	Description

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description
`final BlastCLI`	`of(ObjectNode js)`	Creates a new BlastCLI instance of one of the following types from the given input JSON: BlastN BlastP BlastX DeltaBlast PSIBlast RPSBlast RPSTBlastN TBlastN TBlastX BlastFormatter This method is intended to be used to construct a BLAST+ configuration instance from a JSON value where the type of the config is not known beforehand.
`final BlastN`	`blastn(ObjectNode js)`	Creates a new BlastN instance by parsing the given JSON input.
`final BlastN`	`blastn()`	Creates a new, defaulted BlastN instance.
`final BlastP`	`blastp(ObjectNode js)`	Creates a new BlastP instance by parsing the given JSON input.
`final BlastP`	`blastp()`	Creates a new, defaulted BlastP instance.
`final BlastX`	`blastx(ObjectNode js)`	Creates a new BlastX instance by parsing the given JSON input.
`final BlastX`	`blastx()`	Creates a new, defaulted BlastX instance.
`final DeltaBlast`	`deltablast(ObjectNode js)`	Creates a new DeltaBlast instance by parsing the given JSON input.
`final DeltaBlast`	`deltablast()`	Creates a new, defaulted DeltaBlast instance.
`final PSIBlast`	`psiblast(ObjectNode js)`	Creates a new PSIBlast instance by parsing the given JSON input.
`final PSIBlast`	`psiblast()`	Creates a new, defaulted PSIBlast instance.
`final RPSBlast`	`rpsblast(ObjectNode js)`	Creates a new RPSBlast instance by parsing the given JSON input.
`final RPSBlast`	`rpsblast()`	Creates a new, defaulted RPSBlast instance.
`final RPSTBlastN`	`rpstblastn(ObjectNode js)`	Creates a new RPSTBlastN instance by parsing the given JSON input.
`final RPSTBlastN`	`rpstblastn()`	Creates a new, defaulted RPSTBlastN instance.
`final TBlastN`	`tblastn(ObjectNode js)`	Creates a new TBlastN instance by parsing the given JSON input.
`final TBlastN`	`tblastn()`	Creates a new, defaulted TBlastN instance.
`final TBlastX`	`tblastx(ObjectNode js)`	Creates a new TBlastX instance by parsing the given JSON input.
`final TBlastX`	`tblastx()`	Creates a new, defaulted TBlastX instance.
`final BlastFormatter`	`blastFormatter(ObjectNode js)`	Creates a new BlastFormatter instance by parsing the given JSON input.
`final BlastFormatter`	`blastFormatter()`	Creates a new, defaulted BlastFormatter instance.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
- Method Detail
  - of
```
 final BlastCLI of(ObjectNode js)
```
    Creates a new BlastCLI instance of one of the following types from the given input JSON:
    BlastN
    BlastP
    BlastX
    DeltaBlast
    PSIBlast
    RPSBlast
    RPSTBlastN
    TBlastN
    TBlastX
    BlastFormatter
    This method is intended to be used to construct a BLAST+ configuration instance from a JSON value where the type of the config is not known beforehand.
    The BlastCLI.tool property may be used after deserialization to determine the type of the config and cast it correctly.
    Example
    // input == { // "tool": "blastn", // ... //} val config = Blast.of(input) if (config.tool == BlastTool.BlastN) val blastnConfig = config as BlastN
    Parameters:
    
    js - JSON object to parse.
  - blastn
```
 final BlastN blastn(ObjectNode js)
```
    Creates a new BlastN instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - blastn
```
 final BlastN blastn()
```
    Creates a new, defaulted BlastN instance.
  - blastp
```
 final BlastP blastp(ObjectNode js)
```
    Creates a new BlastP instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - blastp
```
 final BlastP blastp()
```
    Creates a new, defaulted BlastP instance.
  - blastx
```
 final BlastX blastx(ObjectNode js)
```
    Creates a new BlastX instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - blastx
```
 final BlastX blastx()
```
    Creates a new, defaulted BlastX instance.
  - deltablast
```
 final DeltaBlast deltablast(ObjectNode js)
```
    Creates a new DeltaBlast instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - deltablast
```
 final DeltaBlast deltablast()
```
    Creates a new, defaulted DeltaBlast instance.
  - psiblast
```
 final PSIBlast psiblast(ObjectNode js)
```
    Creates a new PSIBlast instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - psiblast
```
 final PSIBlast psiblast()
```
    Creates a new, defaulted PSIBlast instance.
  - rpsblast
```
 final RPSBlast rpsblast(ObjectNode js)
```
    Creates a new RPSBlast instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - rpsblast
```
 final RPSBlast rpsblast()
```
    Creates a new, defaulted RPSBlast instance.
  - rpstblastn
```
 final RPSTBlastN rpstblastn(ObjectNode js)
```
    Creates a new RPSTBlastN instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - rpstblastn
```
 final RPSTBlastN rpstblastn()
```
    Creates a new, defaulted RPSTBlastN instance.
  - tblastn
```
 final TBlastN tblastn(ObjectNode js)
```
    Creates a new TBlastN instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - tblastn
```
 final TBlastN tblastn()
```
    Creates a new, defaulted TBlastN instance.
  - tblastx
```
 final TBlastX tblastx(ObjectNode js)
```
    Creates a new TBlastX instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - tblastx
```
 final TBlastX tblastx()
```
    Creates a new, defaulted TBlastX instance.
  - blastFormatter
```
 final BlastFormatter blastFormatter(ObjectNode js)
```
    Creates a new BlastFormatter instance by parsing the given JSON input.
    
    Parameters:
    
    js - JSON object to parse.
  - blastFormatter
```
 final BlastFormatter blastFormatter()
```
    Creates a new, defaulted BlastFormatter instance.

Object Blast

Nested Class Summary

Field Summary

Constructor Summary

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

Method Detail

of

blastn

blastn

blastp

blastp

blastx

blastx

deltablast

deltablast

psiblast

psiblast

rpsblast

rpsblast

rpstblastn

rpstblastn

tblastn

tblastn

tblastx

tblastx

blastFormatter

blastFormatter