Package org.veupathdb.lib.blast.blastx.field

Class Summary
Class	Description
BlastXTask	-task `<String>`Permissible values: blastx blastx-fast Task to executeDefault = `blastx`
CompBasedStatsX	-comp_based_stats `<String>`Use composition-based statistics: `D` or `d`: default (equivalent to 2) `0` or `F` or `f`: No composition-based statistics `1`: Composition-based statistics as in NAR 29:2994-3005, 2001 `2` or `T` or `t` : Composition-based score adjustment as in Bioinformatics 21:902-911, 2005, conditioned on sequence properties `3`: Composition-based score adjustment as in Bioinformatics 21:902-911, 2005, unconditionally Default = `2`
ScoringMatrixX	-matrix `<String>`Scoring matrix name (normally BLOSUM62)
SoftMaskingX	-soft_masking `<Boolean>`Apply filtering locations as soft masksDefault = `false`
WordSizeX	-word_size `<Integer, >=2>`Word size for wordfinder algorithm

Enum Summary
Enum Description

BlastXTaskType

CompBasedStatsXValue

ScoringMatrixXType
Object Summary
Object Description

Companion
Interface Summary
Interface Description

SegX -seg <String>Filter query sequence with SEG.