All Implemented Interfaces:


public final class FlagsKt

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description

Field Summary

Fields
Modifier and Type	Field	Description
`public final static String`	`FlagArchive`
`public final static String`	`FlagBestHitOverhang`
`public final static String`	`FlagBestHitScoreEdge`
`public final static String`	`FlagCompBasedStats`
`public final static String`	`FlagCullingLimit`
`public final static String`	`FlagDBFile`
`public final static String`	`FlagDBGenCode`
`public final static String`	`FlagDBHardMask`
`public final static String`	`FlagDBSize`
`public final static String`	`FlagDBSoftMask`
`public final static String`	`FlagDomainInclusionEThresh`
`public final static String`	`FlagDust`
`public final static String`	`FlagEntrezQuery`
`public final static String`	`FlagExpectValue`
`public final static String`	`FlagExportSearchStrategy`
`public final static String`	`FlagFilteringDB`
`public final static String`	`FlagGIList`
`public final static String`	`FlagGapExtend`
`public final static String`	`FlagGapOpen`
`public final static String`	`FlagGapTrigger`
`public final static String`	`FlagHTML`
`public final static String`	`FlagHelpLong`
`public final static String`	`FlagHelpShort`
`public final static String`	`FlagIgnoreMSAMaster`
`public final static String`	`FlagInMSA`
`public final static String`	`FlagInPSSM`
`public final static String`	`FlagIPGList`
`public final static String`	`FlagImportSearchStrategy`
`public final static String`	`FlagInclusionEThresh`
`public final static String`	`FlagIndexName`
`public final static String`	`FlagLineLength`
`public final static String`	`FlagLowercaseMasking`
`public final static String`	`FlagMatrix`
`public final static String`	`FlagMaxHSPs`
`public final static String`	`FlagMaxIntronLength`
`public final static String`	`FlagMaxTargetSeqs`
`public final static String`	`FlagMinRawGappedScore`
`public final static String`	`FlagMSAMasterIndex`
`public final static String`	`FlagMultiThreadingMode`
`public final static String`	`FlagNegativeGIList`
`public final static String`	`FlagNegativeIPGList`
`public final static String`	`FlagNegativeSeqIDList`
`public final static String`	`FlagNegativeTaxIDList`
`public final static String`	`FlagNegativeTaxIDs`
`public final static String`	`FlagNonGreedy`
`public final static String`	`FlagNumAlignments`
`public final static String`	`FlagNumDescriptions`
`public final static String`	`FlagNumIterations`
`public final static String`	`FlagNumThreads`
`public final static String`	`FlagOffDiagonalRange`
`public final static String`	`FlagOut`
`public final static String`	`FlagOutASCIIPSSM`
`public final static String`	`FlagOutFormat`
`public final static String`	`FlagOutPSSM`
`public final static String`	`FlagParseDefLines`
`public final static String`	`FlagPenalty`
`public final static String`	`FlagPercentIdentity`
`public final static String`	`FlagPHIPattern`
`public final static String`	`FlagPseudoCount`
`public final static String`	`FlagQueryCoverageHSPPercent`
`public final static String`	`FlagQueryFile`
`public final static String`	`FlagQueryGenCode`
`public final static String`	`FlagQueryLocation`
`public final static String`	`FlagRemote`
`public final static String`	`FlagReward`
`public final static String`	`FlagRID`
`public final static String`	`FlagRPSDB`
`public final static String`	`FlagSaveEachPSSM`
`public final static String`	`FlagSavePSSMAfterLastRound`
`public final static String`	`FlagSearchSpace`
`public final static String`	`FlagSeg`
`public final static String`	`FlagSeqIDList`
`public final static String`	`FlagShowDomainHits`
`public final static String`	`FlagShowGIs`
`public final static String`	`FlagSoftMasking`
`public final static String`	`FlagSortHSPs`
`public final static String`	`FlagSortHits`
`public final static String`	`FlagStrand`
`public final static String`	`FlagSubjectBestHit`
`public final static String`	`FlagSubjectFile`
`public final static String`	`FlagSubjectLocation`
`public final static String`	`FlagSumStats`
`public final static String`	`FlagTask`
`public final static String`	`FlagTaxIDList`
`public final static String`	`FlagTaxIDs`
`public final static String`	`FlagTemplateLength`
`public final static String`	`FlagTemplateType`
`public final static String`	`FlagThreshold`
`public final static String`	`FlagUngapped`
`public final static String`	`FlagUseIndex`
`public final static String`	`FlagUseSWTBack`
`public final static String`	`FlagVersion`
`public final static String`	`FlagWindowMaskerDB`
`public final static String`	`FlagWindowMaskerTaxID`
`public final static String`	`FlagWindowSize`
`public final static String`	`FlagWordSize`
`public final static String`	`FlagXDropFinalGap`
`public final static String`	`FlagXDropPrelimGap`
`public final static String`	`FlagXDropUngap`

Constructor Summary

Constructors
Constructor	Description

Enum Constant Summary

Enum Constants
Enum Constant	Description

Method Summary

Modifier and Type	Method	Description

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
- Method Detail

Class FlagsKt

Nested Class Summary

Field Summary

Constructor Summary

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

Method Detail