Package 

Interface Seg

  • All Implemented Interfaces:
    org.veupathdb.lib.blast.serial.BlastField 
    
public interface Seg
 implements BlastField

    Low complexity region masker based on the SEG algorithm.

    Individual Blast+ tools will override/implement this interface as the defaults are different per Blast tool.

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Field Summary

      Fields 
      Modifier and Type Field Description

    • Constructor Summary

      Constructors 
      Constructor Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      abstract Boolean getIsYes() Indicates whether this SEG value equals "yes".
      abstract Boolean getIsNo() Indicates whether this SEG value equals "no".
      abstract Integer getWindow() SEG windowDefault = 12
      abstract Double getLocut() SEG locutDefault = 2.2
      abstract Double getHicut() SEG hicutDefault = 2.5
      abstract Boolean getIsDefault() Indicates whether the field is currently set to its default value.
      abstract String getName() The name of this field.

      • Methods inherited from class org.veupathdb.lib.blast.common.fields.Seg

        appendCliParts, appendCliSegment, appendJson, toJson

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait