Package org.veupathdb.lib.blast.deltablast.fields

Class Summary
Class	Description
CompBasedStatsDelta	-comp_based_stats `<String>`Use composition-based statistics: `D` or `d`: default (equivalent to 1) `0` or `F` or `f`: No composition-based statistics `1` or `T` or `t`: Composition-based statistics as in NAR 29:2994-3005, 2001 Default = `1`
DomainInclusionEValueThreshold	-domain_inclusion_ethresh `<Real>`E-value inclusion threshold for alignments with conserved domainsDefault = `0.05`
MatrixDelta	-matrix `<String>`Scoring matrix name (normally BLOSUM62)
RPSDB	-rpsdb `<String>`BLAST domain database nameDefault = `cdd_delta`
ShowDomainHits	-show_domain_hitsShow domain hits
SoftMaskingDelta	-soft_masking `<Boolean>`Apply filtering locations as soft masksDefault = `false`
WordSizeDelta	-word_size `<Integer, >=2>`Word size for wordfinder algorithm

Enum Summary
Enum	Description
CompBasedStatsDeltaValue
MatrixDeltaType