Package 

Class InMSAFile

  • All Implemented Interfaces:
    org.veupathdb.lib.blast.serial.BlastField 
    @JvmInline() 
public final class InMSAFile
 implements BlastField

    -in_msa <File_In>

    File name of multiple sequence alignment to restart PSI-BLAST

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Constructor Summary

      Constructors 
      Constructor Description
      InMSAFile(String file)

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      Boolean getIsDefault() Indicates whether the field is currently set to its default value.
      String getName() The name of this field.
      final String getFile()
      Unit appendJson(ObjectNode js) Appends this field to the given JSON ObjectNode only if it is not set to its default value.
      Unit appendCliSegment(StringBuilder cli) Appends this field to the given StringBuilder only if it is not set to its default value.
      Unit appendCliParts(List<String> cli) Appends this field to the given MutableList only if it is not set to its default value.

      • Methods inherited from class org.veupathdb.lib.blast.psiblast.fields.InMSAFile

        toJson

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait