blast-types/org.veupathdb.lib.blast.common.fields/FormatField

FormatField

enum FormatField : Enum<FormatField>
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Entries

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StandardFields("std")
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SubjectAsReferenceSeq("SR")
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IncludeSequenceData("SQ")
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QueryCoveragePerUniqueSubject("qcovus")
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QueryCoveragePerHSP("qcovhsp")
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QueryCoveragePerSubject("qcovs")
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SubjectStrand("sstrand")
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AllSubjectTitles("salltitles")
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SubjectTitle("stitle")
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UniqueSubjectSuperKingdoms("sskingdoms")
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UniqueSubjectBlastNames("sblastnames")
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UniqueSubjectCommonNames("scomnames")
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UniqueSubjectScientificNames("sscinames")
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UniqueSubjectTaxonomyIDs("staxids")
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SubjectSuperKingdom("sskingdom")
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SubjectBlastName("sblastname")
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SubjectCommonName("scomname")
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SubjectScientificName("ssciname")
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SubjectTaxonomyID("staxid")
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BlastTracebackOperations("btop")
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SubjectFrame("sframe")
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QueryFrame("qframe")
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QueryAndSubjectFrames("frames")
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PercentageOfPositiveScoringMatches("ppos")
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TotalNumberOfGaps("gaps")
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NumberOfGapOpenings("gapopen")
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NumberOfPositiveScoringMatches("positive")
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NumberOfMismatches("mismatch")
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NumberOfIdenticalMatches("nident")
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PercentageOfIdenticalMatches("pident")
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AlignmentLength("length")
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RawScore("score")
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BitScore("bitscore")
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ExpectValue("evalue")
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AlignedPartOfSubjectSequence("sseq")
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AlignedPartOfQuerySequence("qseq")
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EndOfAlignmentInSubject("send")
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StartOfAlignmentInSubject("sstart")
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EndOfAlignmentInQuery("qend")
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StartOfAlignmentInQuery("qstart")
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SubjectSequenceLength("slen")
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AllSubjectAccessions("sallacc")
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SubjectAccessionVersion("saccver")
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SubjectAccession("sacc")
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AllSubjectGIs("sallgi")
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SubjectGI("sgi")
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AllSubjectSeqIDs("sallseqid")
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SubjectSeqID("sseqid")
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QuerySequenceLength("qlen")
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QueryAccessionVersion("qaccver")
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QueryAccession("qacc")
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QueryGI("qgi")
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QuerySeqID("qseqid")
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Properties

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val isDefault: Boolean
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val name: String
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val ordinal: Int
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val value: String
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