Package 

Class ScoringMatrixX

  • All Implemented Interfaces:
    org.veupathdb.lib.blast.serial.BlastField 
    @JvmInline() 
public final class ScoringMatrixX
 implements BlastField

    -matrix <String>

    Scoring matrix name (normally BLOSUM62)

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      Boolean getIsDefault() Indicates whether the field is currently set to its default value.
      String getName() The name of this field.
      final ScoringMatrixXType getValue()
      Unit appendJson(ObjectNode js) Appends this field to the given JSON ObjectNode only if it is not set to its default value.
      Unit appendCliSegment(StringBuilder cli) Appends this field to the given StringBuilder only if it is not set to its default value.
      Unit appendCliParts(List<String> cli) Appends this field to the given MutableList only if it is not set to its default value.

      • Methods inherited from class org.veupathdb.lib.blast.blastx.field.ScoringMatrixX

        toJson

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait