diamondcli/org.veupathdb.lib.cli.diamond.opts/AdvancedClusteringAlignmentOptionContainer

AdvancedClusteringAlignmentOptionContainer

interface AdvancedClusteringAlignmentOptionContainer

Inheritors

Properties

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abstract var bins: UInt?

Number of query bins for seed search.

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abstract var dbSize: ULong?

Effective database size (in letters).

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abstract var extChunkSize: ULong?

Chunk size for adaptive ranking.

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abstract var noAutoAppend: Boolean?

Disable auto appending of DAA and DMND file extensions.

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abstract var noRanking: Boolean?

Disable ranking heuristic.

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abstract var tantanMinMaskProb: Double?

Minimum repeat probability for masking.