diamondcli/org.veupathdb.lib.cli.diamond.opts/ClusteringGeneralOptionContainer

ClusteringGeneralOptionContainer

interface ClusteringGeneralOptionContainer

Inheritors

Properties

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abstract var clusterSteps: List<String>?

Clustering steps.

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abstract var kmerRanking: Boolean?

Rank sequences based on kmer frequency in linear stage.

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abstract var roundApproxID: List<String>?

Per-round approx-id cutoffs for cascaded clustering.

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abstract var roundCoverage: List<String>?

Per-round coverage cutoffs for cascaded clustering.