diamondcli/org.veupathdb.lib.cli.diamond/Diamond

Diamond

object Diamond

Types

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object Options

Functions

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@JvmStatic
@DiamondExtras
fun blastN(): BlastN

Creates a new, blank BlastN CLI configuration instance.

@JvmStatic
@DiamondExtras
fun blastN(json: JsonNode): BlastN

Attempts to parse the given JSON value as a BlastN CLI configuration.

@JvmStatic
@DiamondExtras
fun blastN(json: InputStream): BlastN

Attempts to parse the given JSON stream as a BlastN CLI configuration.

@JvmStatic
@DiamondExtras
inline fun blastN(action: BlastN.() -> Unit): BlastN

Creates a new, blank BlastN CLI configuration instance and passes it to the given action before returning it.

@JvmStatic
@DiamondExtras
fun blastN(json: String): BlastN

Attempts to parse the given JSON string as a BlastN CLI configuration.

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@JvmStatic
fun blastP(): BlastP

Creates a new, blank BlastP CLI configuration instance.

@JvmStatic
fun blastP(json: JsonNode): BlastP

Attempts to parse the given JSON value as a BlastP CLI configuration.

@JvmStatic
fun blastP(json: InputStream): BlastP

Attempts to parse the given JSON stream as a BlastP CLI configuration.

@JvmStatic
inline fun blastP(action: BlastP.() -> Unit): BlastP

Creates a new, blank BlastP CLI configuration instance and passes it to the given action before returning it.

@JvmStatic
fun blastP(json: String): BlastP

Attempts to parse the given JSON string as a BlastP CLI configuration.

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@JvmStatic
fun blastX(): BlastX

Creates a new, blank BlastX CLI configuration instance.

@JvmStatic
fun blastX(json: JsonNode): BlastX

Attempts to parse the given JSON value as a BlastX CLI configuration.

@JvmStatic
fun blastX(json: InputStream): BlastX

Attempts to parse the given JSON stream as a BlastX CLI configuration.

@JvmStatic
inline fun blastX(action: BlastX.() -> Unit): BlastX

Creates a new, blank BlastX CLI configuration instance and passes it to the given action before returning it.

@JvmStatic
fun blastX(json: String): BlastX

Attempts to parse the given JSON string as a BlastP CLI configuration.