blast-types/org.veupathdb.lib.blast.blastn.fields

Package org.veupathdb.lib.blast.blastn.fields

Types

value class BlastNTask(value: BlastNTaskType) : BlastField

-task <String>

enum BlastNTaskType : Enum<BlastNTaskType>

interface Dust : BlastField

-dust <String>

value class FilteringDB(value: String) : BlastField

-filtering_db <String>

value class IndexName(value: String) : BlastField

-index_name <String>

MinRawGappedScore

value class MinRawGappedScore(value: Int) : BlastField

-min_raw_gapped_score <Integer>

value class NonGreedy(value: Boolean) : BlastField

-no_greedy

OffDiagonalRange

value class OffDiagonalRange(value: UInt) : BlastField

-off_diagonal_range <Integer, >=0>

value class Penalty(value: Int) : BlastField

-penalty <Integer, <=0>

PercentIdentity

value class PercentIdentity(value: Double) : BlastField

-perc_identity <Real, 0..100>

value class Reward(value: UInt) : BlastField

-reward <Integer, >=0>

value class SoftMaskingN(value: Boolean) : BlastField

-soft_masking <Boolean>

value class TemplateLength(value: TemplateLengthValue) : BlastField

-template_length <Integer>

TemplateLengthValue

enum TemplateLengthValue : Enum<TemplateLengthValue>

value class TemplateType(value: TemplateTypeType) : BlastField

-template_type <String>

TemplateTypeType

enum TemplateTypeType : Enum<TemplateTypeType>

value class UseIndex(value: Boolean) : BlastField

-use_index <Boolean>

value class WindowMaskerDB(file: String) : BlastField

-window_masker_db <String>

WindowMaskerTaxID

value class WindowMaskerTaxID(value: Int) : BlastField

-window_masker_taxid <Integer>