blast-types/org.veupathdb.lib.blast.serial/BlastField

BlastField

interface BlastField

Represents a single, defaultable field/argument for a blast tool.

Functions

appendCliParts

abstract fun appendCliParts(cli: MutableList<String>)

Appends this field to the given MutableList only if it is not set to its default value.

appendCliSegment

abstract fun appendCliSegment(cli: StringBuilder)

Appends this field to the given StringBuilder only if it is not set to its default value.

appendJson

abstract fun appendJson(js: ObjectNode)

Appends this field to the given JSON ObjectNode only if it is not set to its default value.

toJson

open fun toJson(): ObjectNode

Serializes this field into a JSON ObjectNode.

Properties

isDefault

abstract val isDefault: Boolean

Indicates whether the field is currently set to its default value.

name

abstract val name: String

The name of this field.

Inheritors

InclusionEValueThreshold

QueryCoverageHSPPercent

SavePSSMAfterLastRound

UngappedAlignmentsOnly

UseSmithWatermanTraceback

Version

WindowSize

ExtensionDropoffUngapped

ExtensionDropoffPrelimGapped

ExtensionDropoffFinalGapped

CompBasedStatsDelta

DomainInclusionEValueThreshold