blast-types/org.veupathdb.lib.blast.blastx.field/CompBasedStatsX

CompBasedStatsX

value class CompBasedStatsX(value: CompBasedStatsXValue) : BlastField

-comp_based_stats <String>

Use composition-based statistics:

D or d: default (equivalent to 2)
0 or F or f: No composition-based statistics
1: Composition-based statistics as in NAR 29:2994-3005, 2001
2 or T or t : Composition-based score adjustment as in Bioinformatics 21:902-911, 2005, conditioned on sequence properties
3: Composition-based score adjustment as in Bioinformatics 21:902-911, 2005, unconditionally

Default = 2

Constructors

CompBasedStatsX

fun CompBasedStatsX(value: CompBasedStatsXValue = Def)

Functions

open override fun appendCliParts(cli: MutableList<String>)

Appends this field to the given MutableList only if it is not set to its default value.

appendCliSegment

open override fun appendCliSegment(cli: StringBuilder)

Appends this field to the given StringBuilder only if it is not set to its default value.

open override fun appendJson(js: ObjectNode)

Appends this field to the given JSON ObjectNode only if it is not set to its default value.

open fun toJson(): ObjectNode

Serializes this field into a JSON ObjectNode.

Properties

open override val isDefault: Boolean

Indicates whether the field is currently set to its default value.

open override val name: String

The name of this field.

val value: CompBasedStatsXValue