blast-types/org.veupathdb.lib.blast.psiblast.fields/MSAMasterIndex

MSAMasterIndex

value class MSAMasterIndex(value: UInt) : BlastField

-msa_master_idx <Integer, >=1>

Ordinal number (1-based index) of the sequence to use as a master in the multiple sequence alignment. If not provided, the first sequence in the multiple sequence alignment will be used

Requires: -in_msa

Constructors

MSAMasterIndex

fun MSAMasterIndex(value: UInt)

Functions

appendCliParts

open override fun appendCliParts(cli: MutableList<String>)

Appends this field to the given MutableList only if it is not set to its default value.

appendCliSegment

open override fun appendCliSegment(cli: StringBuilder)

Appends this field to the given StringBuilder only if it is not set to its default value.

appendJson

open override fun appendJson(js: ObjectNode)

Appends this field to the given JSON ObjectNode only if it is not set to its default value.

toJson

open fun toJson(): ObjectNode

Serializes this field into a JSON ObjectNode.

Properties

isDefault

open override val isDefault: Boolean

Indicates whether the field is currently set to its default value.

name

open override val name: String

The name of this field.

value

val value: UInt