blast-types/org.veupathdb.lib.blast.psiblast.fields

Package org.veupathdb.lib.blast.psiblast.fields

Types

CompBasedStatsPSI

value class CompBasedStatsPSI(value: CompBasedStatsPSIValue) : BlastField

-comp_based_stats <String>

CompBasedStatsPSIValue

enum CompBasedStatsPSIValue : Enum<CompBasedStatsPSIValue>

IgnoreMSAMaster

value class IgnoreMSAMaster(value: Boolean) : BlastField

-ignore_msa_master

value class InMSAFile(file: String) : BlastField

-in_msa <File_In>

value class MatrixPSI(value: MatrixPSIType) : BlastField

-matrix <String>

enum MatrixPSIType : Enum<MatrixPSIType>

value class MSAMasterIndex(value: UInt) : BlastField

-msa_master_idx <Integer, >=1>

value class PHIPatternFile(value: String) : BlastField

-phi_pattern <File_In>

interface SegPSI : Seg

value class SoftMaskingPSI(value: Boolean) : BlastField

-soft_masking <Boolean>

value class WordSizePSI(value: UInt) : BlastField

-word_size <Integer, >=2>