Seg

Low complexity region masker based on the SEG algorithm.

Individual Blast+ tools will override/implement this interface as the defaults are different per Blast tool.

Functions

Appends this field to the given MutableList only if it is not set to its default value.

Appends this field to the given StringBuilder only if it is not set to its default value.

abstract fun appendJson(js: ObjectNode)

Appends this field to the given JSON ObjectNode only if it is not set to its default value.

open fun toJson(): ObjectNode

Serializes this field into a JSON ObjectNode.

abstract val hicut: Double

SEG hicut

Indicates whether the field is currently set to its default value.

abstract val isNo: Boolean

Indicates whether this SEG value equals "no".

abstract val isYes: Boolean

Indicates whether this SEG value equals "yes".

abstract val locut: Double

SEG locut

abstract val name: String

The name of this field.

abstract val window: Int

SEG window