BlastQueryWithIPG

Converts the current BlastCommand to an array of strings making up a CLI call.

Renders the current BlastCommand as a CLI call string.

Serializes the current BlastCommand to a JSON ObjectNode.

Validates this Blast+ config checking for flags that are incompatible and values that are out of range or invalid.

-db <String>

-dbsize <Int8>

-entrez_query <String>

-evalue <Real>

-export_search_strategy <File_Out>

-xdrop_ungap <Real>

-gilist <String>

-html

-import_search_strategy <File_In>

-ipglist <String>

-line_length <Integer>

-help

-lcase_masking

-max_hsps <Integer>

-max_target_seqs <Integer>

-negative_gilist <String>

-negative_ipglist <String>

-negative_seqidlist <String>

-negative_taxidlist <String>

-negative_taxids <String>

-num_alignments <Integer>

-num_descriptions <Integer>

-out <File_Out>

-outfmt <String>

-parse_deflines

-query <File_In>

-query_loc <String>

-remote

-searchsp <Int8>

-seqidlist <String>

-h

-show_gis

-sorthits <Integer>

-sorthsps <Integer>

-taxidlist <String>

-taxids <String>

-version

-window_size <Integer>