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- RawScore - enum entry in org.veupathdb.lib.blast.common.fields.FormatField
- Remote - class in org.veupathdb.lib.blast.common.fields
- -remoteExecute search remotely?
- requires(BlastField,BlastField) - function in org.veupathdb.lib.blast.err.ErrorMap
- Tests a flag that requires another flag to ensure that either the first field is its default value, otherwise both fields are non-default.
- Reward - class in org.veupathdb.lib.blast.blastn.fields
- -reward
<Integer, >=0>Reward for a nucleotide match - RID - class in org.veupathdb.lib.blast.formatter.fields
- -rid
<String>BLAST Request ID (RID) - RMBlastN - enum entry in org.veupathdb.lib.blast.blastn.fields.BlastNTaskType
- rpsblast(ObjectNode) - function in org.veupathdb.lib.blast.Blast
- Creates a new RPSBlast instance by parsing the given JSON input.
- rpsblast() - function in org.veupathdb.lib.blast.Blast
- Creates a new, defaulted RPSBlast instance.
- RPSBlast - enum entry in org.veupathdb.lib.blast.BlastTool
- RPSBlast - class in org.veupathdb.lib.blast.rpsblast
- Reverse Position Specific BLAST 2.11.
- RPSDB - class in org.veupathdb.lib.blast.deltablast.fields
- -rpsdb
<String>BLAST domain database nameDefault =cdd_delta - rpstblastn(ObjectNode) - function in org.veupathdb.lib.blast.Blast
- Creates a new RPSTBlastN instance by parsing the given JSON input.
- rpstblastn() - function in org.veupathdb.lib.blast.Blast
- Creates a new, defaulted RPSTBlastN instance.
- RPSTBlastN - enum entry in org.veupathdb.lib.blast.BlastTool
- RPSTBlastN - class in org.veupathdb.lib.blast.rpstblastn
- Translated Reverse Position Specific BLAST 2.11.